论文专著:

发表研究论文60余篇,出版专著3部。
出版专著:
1、《基础分子生物学》国家“十一五”规划教材,参编,高等教育出版社,2007年6月。
2、《简明分子生物学教程》参编,中国农业出版社,2008年7月。
3、《普通遗传学实验》,张祖新,严长杰 编,高等教育出版社,2015年-6月。
发表英文论文:
1. Fu J, Cheng Y, Linghu J, Yang X, Kang L, Zhang Z, Zhang J, He C, Du X, Peng Z, Wang B, Zhai L, Dai C, Xu J, Wang W, Li X, Zheng J, Chen L, Luo L, Liu J, Qian X, Yan J, Wang J, Wang G(2013) RNA sequencing reveals the complex regulatory network in the maize kernel. Nat Commun. 4:2832 (The co-first author).
2. Li F, Jia H, Liu L, Zhang C, Liu Z, Zhang Z (2014) Quantitative trait loci mapping for kernel row number using chromosome segment substitution lines in maize. Genet Mol Res 2014,13(1):1707-1716.
3.Du H, Huang M, Zhang Z, Cheng S (2014) Genome-wide analysis of the AP2/ERF gene family in maize waterlogging stress response. Euphytica 198:115–126.
4. Zhai L, Sun W, Zhang K, Jia H, Liu L, Liu Z, Teng F, Zhang Z* (2014) Identification and characterization of Argonaute gene family and meiosis-enriched Argonaute during sporogenesis in maize. J Integr Plant Biol, doi: 10.1111/jipb.12205
5. Teng F, Zhai L,Liu R Bai W, Wang L, Huo D, Tao Y, Zheng Y, Zhang Z* (2013) ZmGA3ox2, a candidate gene for a major QTL, qPH3.1, for plant height in maize. The Plant Journal, 73:405-416.
6. Zhai L,Liu Z,Jiang Y, Zou X, Zheng Y, Zhang Z* (2013) miRNA-mediated auxin signaling regulates the initiation and elongation of crown roots of maize under submergence condition. Physiologia Plantarum,147:181-193.
7. Qi H, Huang J, Zheng Q, Huang Y, Shao R, Zhu L, Zhang Z, Qiu F, Zhou G, Zheng Y, Yue B (2013) Identification of combining ability loci for five yield-related traits in maize using a set of testcrosses with introgression lines. Theor Appl Genet.126(2):369-377.
8. Liu R, Jia H, Cao X, Huang J, Li F, Tao Y, Qiu F, Zheng Y, Zhang Z* (2012) Fine mapping and candidate gene prediction of a pleiotropic quantitative trait locus for yield-related trait in Zea mays. PLoS ONE, 7(11): e49836.
9. Liu R, Xing X, Zhang H, Zhao P, Zhang Z* (2012) Mining of Candidate Maize Genes for Nitrogen Use Efficiency by Integrating Gene Expression and QTL Data. Plant Mol Biol Report, 2:297-308.
10. LV A, Zhang H, Zhang Z*, Tao Y, Yue B, Zheng Y (2012) Coversion of the statistical combining into a genetic concept. Journal of Intergrative Agriculture, 11(1):43-52.
11. Li Q, Yang X, Xu S, Cai Y, Zhang D, Han Y, Li L, Zhang Z, Gao S, Li J, Yan J (2012) Genome-Wide Association Studies Identified Three Independent Polymorphisms Associated with α-Tocopherol Content in Maize Kernels. PLoS ONE 7(5): e36807.
12. Zhang X, Tang B, Yu F, Li L, Wang M, Xue Y, Zhang Z, Yan J, Yue B, Zheng Y, Qiu F (2012) Identification of major QTL for waterlogging tolerance using genome-wide association and linkage mapping of maize seedlings. Plant Mol Biol Report, Doi: 10.1007/s11105-012- 0526-3.
13. Zou X, Jiang Y, Zheng Y, Zhang Z* (2011) Prolyl 4-hydroxylase genes are subjected to alternative splicing in roots of maize seedlings under waterlogging. Annals of Botany, 108:1323–1335.
14. Yang X, Yan J, Gao S, Zhang Z, Li J (2011) Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize. Mol Breeding, 28:511-526.
15. Mining of Candidate Maize Genes for Nitrogen Use Efficiency by Integrating Gene Expression and QTL Data. Plant Mol Biol Rep,2011, DOI 10.1007/s11105-011-0346-x .(通讯作者)
16. Du H, Zhang Z*, Li JS. Isolation and functional characterization of a waterlogging induced promoter from maize. Plant Cell Reports,2010,29:1269-1275.(通讯作者)
17. Bai W. Wang L, Teng F, Tao Y, Zhang Z* The evidence for non-additive effect as the main genetic component for maize plant height and ear height using introgression line populations. Plant Breeding, 2010, 129:376-384.(通讯作者)
18.Zou X, Jiang Y, Zhang Z, Zheng Y* Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging. BMC Plant Biology,2010,10:189. doi:10.1186/1471-2229-10-189.(第4)
19. Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize. Molecular Breeding,2010,doi:10.1007/s11032-010-9500-7.(第4)
20. Ding D, Wang H, Liu Z, Zhang Z, Zheng Y Differential expression of miRNAs in response to salt stress in maize roots. Annals of Botany, 2009; 103: 29 - 38 (第4作者)
21.Evaluation of phenotype and genetic diversity of maize landraces from Hubei Province, Southwest China. Frontiers of Agriculture in China, 2009, 3(4):374-382.(通讯作者)
22.Wei L, Zhang D, Zhang Z* Differentially expressed miRNAs potentially involved in the regulation of defense mechanism to drought stress in maize seedlings. Int J Plant Sci, 2009, , 170 (8): 979 -989,DOI: 10.1086/605122. (通讯作者)
23.Wang L,Wei L,Zhang D,Tao Y,Zheng Y, Zhang Z* The residual background genome from a donor within an improved line selected by marker-assisted selection: impact on phenotype and combining ability. Plant Breeding, 2009, 128:429–435.(通讯作者)
24.Zhang Z*, Zhang D, Zheng Y. Transcriptional and post-transcriptional regulation of gene expression in submerged root cells of maize. Plant Signaling & Behavior, 2009,4(2):30-33.(第一作者)
25.Zhang Z, Wei L, Zou X, Tao Y, Liu Z, Zheng Y Submergence-responsive microRNA is potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Annals of Botany, 2008,102(4):509-519. (第一作者)
26. Revelation on early response and molecular mechanism of submergence tolerance in maize roots by microarray and suppression subtractive hybridization. Environ Exp Bot. 2006,58:53-63.(第一作者)
27. Fertility restoration mechanisms in CMS-S of maize (Zea mays L.) revealed through expression differences identified by cDNA microarray and suppression subtractive hybridization. Plant Mol Biol Rep,2005,23(1):17-38(第一作者)
28.Construction and characterization of normalized multiple tissues and developmental stages cDNA library of maize inbred Mo17. Mol Biol, 2005,39(2):177-184(第一作者)
29.cDNA Microarray Analysis of Early Response to Submerging Stress in Zea mays Roots. J Russ plant physiol, 2005, 52(1):43-49(第一作者)
发表中文期刊论文:
[1]赵然,蔡曼君,杜艳芳,张祖新.玉米籽粒形成的分子生物学基础[J].中国农业科学,2019,52(20):3495-3506.
[2]李云富,王静贤,杜艳芳,邹华文,张祖新.玉米开花期相关的Indeterminate domain(IDD)蛋白家族基因的鉴定[J].作物学报,2019,45(04):499-507.
[3]金危危,赖锦盛,张祖新,高世斌.玉米骨干自交系深度重测序及有利基因挖掘[J].科技创新导报,2016,13(01):169.
[4]曹征,李曼菲,孙伟,张丹,张祖新.玉米BEL1-like基因家族的鉴定、表达和调控分析[J].作物学报,2015,41(11):1632-1639.
[5]申晓蒙,刘磊,张祖新.玉米花序建成相关基因及其调控网络[J].中国科学:生命科学,2014,44(08):775-783.
[6]张士龙,贺正华,张祖新,邱法展,黄益勤.聚合Cry1C*和VHb基因玉米抗虫耐渍新种质的创制[J].玉米科学,2014,22(02):46-52.
[7]齐欢欢,段利超,胡伟,黄娟,冯阳,黄亚群,祝丽英,张祖新,岳兵.利用导入系群体对玉米产量及产量相关性状进行定位分析[J].玉米科学,2013,21(04):24-27+32.
[8]杨伟峰,王荣纳,曹晓良,张祖新,陶勇生,陈景堂,郑用琏.Mutator转座子介导的PPR插入位点分离与遗传分析[J].中国农学通报,2013,29(03):180-183.
[9]曹晓良,翟立红,刘瑞响,陶勇生,张祖新.玉米八个产量相关性状的QTL鉴定[J].河北农业大学学报,2012,35(05):1-8.
[10]刘瑞响,曹晓良,陶勇生,张祖新.不同氮素水平下玉米产量与zmAspAT基因表达分析[J].中国农学通报,2012,28(24):22-26.
[11]王立秋,张祖新,滕峰,邱法展,肖海林,郑用琏.染色体片段导入系在作物遗传育种研究中的应用[J].植物遗传资源学报,2012,13(01):98-104.
[12]李成璞,白苇,翟立红,陶勇生,张祖新.玉米穗行数QTL及其互作分析[J].植物遗传资源学报,2011,12(06):965-970.
[13]赵璞,刘瑞响,李成璞,邢向茹,曹晓良,陶勇生,张祖新.基于掖478导入系的玉米产量性状QTL鉴定[J].中国农业科学,2011,44(17):3508-3519.
[14]邢向茹,陈晨,刘瑞响,赵璞,李成璞,张祖新.低氮胁迫对玉米染色体片段导入系产量和苗期性状的影响[J].安徽农业科学,2011,39(21):12670-12672+12686.
[15]刘海军,高慧,黄亚群,陈景堂,祝丽英,赵永峰,张祖新.玉米锌转运蛋白基因ZmZIP4 cDNA的克隆和表达分析[J].西北植物学报,2011,31(06):1077-1083.
[16]高慧,刘海军,黄亚群,陈景堂,祝丽英,赵永锋,张祖新.玉米寡肽转运蛋白基因(ZmOPT0212)的克隆及其生物信息学分析[J].华北农学报,2011,26(01):99-104.
[17]王婷婷,翟立红,苏旭,冯静,李娟,高友军,陶勇生,张祖新,郑用琏.Mutator诱导的玉米白化突变体插入位点的遗传分析及代谢途径的构建[J].中国农业科学,2010,43(22):4571-4578.
[18]杜何为,黄敏,张祖新.玉米总RNA的小量快速提取[J].河北农业科学,2009,13(09):54-55.
[19]李林,李青,王立博,张祖新,李建生,严建兵.玉米和水稻全基因组控制重组频率QTL的遗传定位分析[J].中国农业科学,2009,42(07):2262-2270.
[20]郭晋杰,陈景堂,祝丽英,胡利宗,张祖新,黄亚群.基于玉米导入系群体的3个农艺性状QTL分析[J].植物遗传资源学报,2009,10(01):27-31.
[21]杜何为,许先凤,黄敏,赵启桂,张祖新.硝酸银对玉米幼胚组织培养的影响[J].河北农业科学,2008(08):62-63.
[22]魏凯,许先凤,杜何为,黄益勤,张祖新.湖北省玉米地方品种遗传多样性的表型评价[J].长江大学学报(自然科学版)农学卷,2008(02):4-9+19+108-109.
[23]王磊,陈景堂,张祖新.主要禾谷类作物比较基因组学研究策略与进展[J].遗传,2007(09):1055-1060.
[24]陶勇生,张祖新,程友林,薛亚东,郑用琏.玉米有丝分裂染色体上玉米BAC探针的FISH杂交体系的构建[J].中国生物化学与分子生物学报,2007(08):682-687.
[25]尤莉,邱法展,张祖新,刘瑞响.整合玉米基因表达与遗传分析资料发掘耐渍性候选基因[J].河北农业大学学报,2007(03):9-13.
[26]王立秋,赵永锋,薛亚东,张祖新,郑用琏,陈景堂.玉米衔接式单片段导入系群体的构建和评价[J].作物学报,2007(04):663-668.
[27]张世煌,郑用琏,谢传晓,李新海,郝转芳,张祖新,王振华,潘光堂,陈彦惠,李明顺.对玉米DNA指纹分析中有关问题的探讨[J].种子科技,2007(01):41-43.
[28]陶勇生,张祖新,程友林,李立家,郑用琏.水稻BAC在玉米有丝分裂染色体上FISH杂交体系的构建[J].中国生物化学与分子生物学报,2007(01):80-84.
[29]胡洁云,杨文鹏,张祖新,郑用琏.玉米Opaque-2基因内3个SSR位点的显性等位变异及其对赖氨酸含量的影响[J].作物学报,2006(09):1265-1271.
[30]穆蕊,张祖新,张方东,郑用琏.玉米CMS-S小孢子败育过程中的细胞程序性死亡[J].作物学报,2006(05):666-670+791.
[31]张祖新,张绍鹏,郑用琏.基于比较基因组学的玉米ESTs定位方法[J].遗传,2006(03):339-344.
[32]张祖新,方明镜,杜何为,邓莉蓉,郑用琏.基于PCR技术的玉米CMS材料胞质类型的快速鉴定[J].作物学报,2005(10):1386-1388.
[33]张祖新,唐万虎,郑用琏.玉米S型细胞质雄性不育与恢复花粉中基因表达差异分析[J].长江大学学报(自科版),2005(08):59-63+6.
[34]张祖新,唐万虎,郑用琏.玉米 S 型细胞质雄性不育与恢复花粉中基因表达差异分析[J].长江大学学报(自科版)农学卷,2005(03):59-63+11.
[35]唐万虎,张祖新,邹锡玲,陈旋,郑用琏.玉米耐渍功能基因组分析及相关基因Sicyp51的鉴定与克隆[J].中国科学C辑:生命科学,2005(01):29-36.
[36]杜何为,张祖新,郑用琏.玉米组织培养及农杆菌遗传转化体系的研究[J].湖北农业科学,2004(02):34-36.
[37]张祖新,张方东,郑用琏.DNA芯片技术在植物功能基因组研究中的应用[J].生物技术,2003(04):38-39.
[38]杜何为,张祖新,郑用琏.玉米组织培养体系的研究[J].湖北农业科学,2003(04):22-24+39.
[39]张祖新,姜华武,魏中一,郑用琏.淹水胁迫下不同耐渍性玉米自交系根系中的酶学研究[J].湖北农业科学,2003(03):25-27+24.
[40]张祖新,张方东,郑用琏.功能基因组学及其研究方法[J].作物学报,2003(02):194-201.
[41]张祖新.RNA干涉原理及其应用[J].湖北农学院学报,2002(06):560-565.
[42]张祖新,张方东,郑用琏.玉米CMS分子生物学研究进展[J].遗传,2002(05):601-606.
[43]曾学礼,张祖新.对湖北省20个玉米地方品种的数量性状分析和聚类分析[J].湖北农业科学,2001(05):35-38.
[44]姜华武,张祖新.淹水对玉米根系几种酶活性的影响[J].湖北农学院学报,1999(03):18-20.
[45]姜华武,张祖新.玉米种质的耐涝性鉴定及耐涝性遗传研究初报[J].湖北农学院学报,1999(02):93-94.
[46]陈在新,张祖新.丰果草莓生物学性状间的相关性研究[J].湖北农学院学报,1999(01):23-25.
[47]姜华武,张祖新.玉米的厌氧代谢与耐涝性[J].湖北农学院学报,1999(01):80-85.
[48]刘纪麟,郑用琏,张祖新,卢洪,李建生,徐尚忠.三峡地区玉米地方品种杂种优势群的初探[J].作物杂志,1998(S1):6-12.
[49]张祖新,陈志红,龚先玲.玉米杂交种遗传改良的自交系的鉴定[J].湖北农学院学报,1998(03):4-7.
[50]王荣堂,张祖新,陈柏寒.农业气象信息系统的开发与利用[J].中国农业气象,1998(01):44-46.
[51]张祖新,吴红清.玉米合成群体中改良单交种的等位基因相对数目估测[J].湖北农学院学报,1997(04):3-6.
[52]王荣堂,张祖新,陈柏寒.农业气象信息系统的开发与利用[J].湖北农学院学报,1997(04):19-22.
[53]张祖新,魏中一,许先凤,涂显平.对湖北省4个玉米新合成群体的遗传评价[J].湖北农业科学,1997(04):20-22.
[54]张祖新,许先凤,姜华武,魏中一.8个玉米综合种的双列杂交分析[J].作物品种资源,1997(03):14-16.
[55]张祖新,许先凤,姜华武,魏中一.八个玉米综合种的双列杂交分析[J].湖北农学院学报,1997(01):9-12.
[56]张祖新,郑用琏,李建生,刘纪麟.玉米地方品种同工酶的遗传多样性及其与数量性状的关系[J].湖北农学院学报,1996(01):1-8.
[57]张祖新,郑用琏,李建生,刘纪麟.玉米10份地方品种和4份外来群体同工酶位点的遗传多样性[J].华中农业大学学报,1995(04):322-326.
[58]张祖新.玉米群体改良中几个问题的讨论[J].湖北农学院学报,1995(03):60-64.
[59]张祖新,刘贵华.对学科建设管理机制的探讨[J].黑龙江高教研究,1995(04):58-60.
[60]张祖新,郑用琏,李建生,刘纪麟.三峡地区10个玉米地方品种的遗传潜势[J].华中农业大学学报,1994(05):449-454.
[61]张祖新,刘纪麟.分子标记在作物遗传育种中的应用[J].湖北农学院学报,1993(03):228-234.
发表会议论文:
[1]张祖新,贾海涛,李曼菲,杨晓红,李威亚. 玉米穗粒数基因KNR6的功能与应用研究[C]. 第十九届中国作物学会学术年会论文摘要集. 2020:49.
[2]Lei Liu,Yanfang Du,Xiaomeng Shen,Wei Sun,Manfei Li,Juan Huang,Yonglian Zheng,Jianbing Yan,张祖新. KRN4 Dominates Natural Variation of Kernel Row Number in Maize[C]. 第一届全国玉米生物学学术研讨会论文汇编 2015:31.
[3]丁冬,汪航,高友军,邹锡玲,张祖新,郑用琏. 利用cDNA芯片技术和消减杂交技术研究玉米苗期盐胁迫抗性相关基因及其分子机制[C]. 湖北省暨武汉市生物化学与分子生物学学会第八届第十七次学术年会论文汇编. 2007:56-57.
[4]王毅,姚骥,张祖新,郑用琏. 玉米QTL图谱的整合和基于比较基因组学的QTL克隆策略探讨[C]. 2004全国玉米种质扩增、改良、创新与分子育种学术会议论文集. 2004:203-213.
[5]张祖新,唐万虎,邹锡玲,郑用琏. 玉米根系对淹水胁迫的早期响应及耐渍相关基因分析[C]. 2004全国玉米种质扩增、改良、创新与分子育种学术会议论文集. 2004:231-242.
[6]郑用琏,张祖新,张方东. 植物功能基因组研究策略[C]. 2003年全国作物遗传育种学术研讨会论文集. 2003:506.