论文专著:

先后在国际性杂志上发表了18篇论文。
出版专著: 
1. Biradar S, Nie X, Feng K, Weining S (2013) Preparation of High Molecular weight gDNA and Bacterial Artificial Chromosome (BAC) libraries. In “Cereal Genomics-Methods and Protocols”Methods in Molecular Biology (Springer series) Ed R J. Henry and A Furtado Springer Science, USA 1099:41-63.
2. Biradar S, Den P and Weining S (2013) Plant WRKY gene family and its response to abiotic stress. In Molecular Approaches for Plant Abiotic Stress. Ed R.K.Gaur and Pradeep Sharma C Taylor & Francis CRC Press.
3. Liu, D., Du X. and Weining S (2011) Acremonium. In: MOLECULAR DETECTION OF HUMAN FUNGAL PATHOGENS Ed. Liu, D. Taylor & Francis CRC Press
4. Weining S and Liu D. (2009) Isolation of Nucleic Acids from Plants. In: Handbook of Nucleic Acid Purification. Ed. Liu, D. Taylor & Francis CRC Press.
5. Weining S and Liu D. (2021) Genetic manipulation and genome editing of Saccharomyces cerevisiae. In: Molecular Food Microbiology. Ed. Liu, D. Taylor & Francis CRC Press
发表英文论文:
[1] Genomic and Phenotypic Divergence in Wild Barley Driven by Microgeographic Adaptation(2020) Advanced Science (影响因子15.84) DOI: 10.1002/advs.202000709 通讯作者
[2] A large‐scale genomic association analysis identifies the candidate causal genes conferring stripe rust resistance under multiple field environments (2020)Plant Biotechnology Journal (影响因子8.2)DOI: 10.1111/pbi.13452
[3] GENOME‐WIDE IDENTIFICATION AND ANALYSIS OF THE CslF GENE FAMILY IN BARLEY (Hordeum vulgare L.) (2020) Journal of Microbiology, Biotechnology and Food Sciences(影响因子0.3)doi: 10.15414/jmbfs.2020.10.1.122-126 通讯作者
[4] The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat.(2019)Plant Biotechnology Journal (影响因子8.2)DOI: 10.1111/pbi.13240 通讯作者
[5] Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat.(2019)The Plant Journal (影响因子6.141)DOI: 10.1111/tpj.14299
[6] Transcriptome and Proteome-Based Network Analysis Reveals a Model of Gene Activation in Wheat Resistance to Stripe Rust.(2019)International Journal of Molecular Sciences (影响因子4.556)20(5):1106 DOI: 10.3390/ijms2005110
[7] Transcriptional Dynamics of Grain Development in Barley (Hordeum vulgare L.).(2019)International Journal of Molecular Sciences (影响因子4.556) 20(962):1-16 通讯作者
[8] Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat,(2019)Genome Biology (影响因子12.16)20(1) DOI: 10.1186/s13059-019-1744-x 通讯作者
[9] N6‐methyladenosine regulatory machinery in plants: composition, function and evolution.(2019)Plant Biotechnology Journal (影响因子8.2)17(7) DOI: 10.1111/pbi.13149 通讯作者
[10] Evolution and Identification of the WRKY Gene Family in Quinoa (Chenopodium quinoa).(2019)Genes (影响因子3.759)10(2):131 DOI: 10.3390/genes10020131 通讯作者
[11] Melatonin: A Small Molecule but Important for Salt Stress Tolerance in Plants.(2019)International Journal of Molecular Sciences (影响因子4.556)20(3):709 DOI: 10.3390/ijms20030709 通讯作者
[12] QTL mapping of plant height, spike length, peduncle length and number of grains per plant in barley (Hordeum vulgare l.) using ‘steptoe/morex’ dh population grown in northwest of China. (2018) Pakistan Journal of Botany (影响因子0.8)50(6):2205-2214 通讯作者
[13] Shifting the limits in wheat research and breeding using a fully annotated reference genome.(2018)Science (影响因子41.058) 361,6403, eaar7191 DOI: 10.1126/science.aar7191
[14] Genome-Wide Sequence and Expressional Analysis of Autophagy Gene Family in Bread Wheat (Triticum aestivum L.).(2018)Jounal of Plant Physiology (影响因子3.013)229 DOI: 10.1016/j.jplph.2018.06.012 通讯作者
[15] Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia.(2018)Nature Communications (影响因子12.121)9(1) DOI: 10.1038/s41467-018-04737-0
[16] Beta-Glucan: An Overview of its Properties, Health Benefits, Genetic Background and Practical Applications. (2018)Journal of Agriculture and Veterinary Sciences DOI: 10.21276/sjavs.2018.5.3.2 通讯作者
[17] Identification and characterisation of RNA editing sites in chloroplast transcripts of einkorn wheat (Triticum monococcum): RNA editing sites in einkorn wheat plastome.(2018)Annals of Applied Biology (影响因子2.037)172(2):197-207 DOI: 10.1111/aab.12412 通讯作者
[18] Comprehensive evaluating of wild and cultivated emmer wheat (Triticum turgidum L.) genotypes response to salt stress.(2018)Plant Growth Regulation(影响因子2.388)84(4) DOI: 10.1007/s10725-017-0337-5 通讯作者
[19] Genome-Wide Identification and Expression Analysis of the HD-Zip Gene Family in Wheat (Triticum aestivum L.). Genes (影响因子3.759)9(2):70 DOI: 10.3390/genes9020070 通讯作者
[20] Direct comparison of β-glucan content in wild and cultivated barley.(2018)International Journal of Food Properties(影响因子1.808)21(1):2218-2228 DOI: 10.1080/10942912.2018.1500486 通讯作者
[21] Conservation analysis of long non-coding RNAs in plants.(2017)Science China. Life sciences (影响因子4.611)61(2) DOI:10.1007/s11427-017-9174-9
[22] Kewei Feng, Xiaojun Nie, Licao Cui, Pingchuan Deng, Mengxing Wang, Weining Song. Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides). Genes, 2017, 8, 156. (SCI收录, 影响因子3.600)
[23] Licao Cui, Kewei Feng, Mengxing Wang, Meng Wang, Pingchuan Deng, Weining Song*, Xiaojun Nie*. Genome-Wide Identification, Phylogeny and Expression Analysis of AP2/ERF Transcription Factors Family in Brachypodium distachyon. BMC Genomics, 2016, 17(1):636. (SCI收录, 影响因子3.867)
[24] Hong Yue, Meng Wang, Siyan Liu, Xianghong Du, Weining Song*, Xiaojun Nie*. Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.). BMC Genomcis, 2016, 17:343. (SCI收录, 影响因子3.867)
[25] Hong Yue, Le Wang, Hui Liu, Wenjie Yue, Xianghong Du, Weining Song*, Xiaojun Nie*. De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development. Frontiers in Plant Science, 2016, 7, 571. (SCI收录, 影响因子4.495)
[26] Pingchuan Deng, Meng Wang, Kewei Feng, Licao Cui, Wei Tong, Weining Song*, Xiaojun Nie*. Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution. Sci. Rep. 2016, 6, 32224.
[27] Meng Wang, Hong Yue, Kewei Feng, Pingchuan Deng, Weining Song*, Xiaojun Nie*. Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.). BMC Genomics, 2016, 17: 668.
[28] Pingchuan Deng, Xiaoxin Bian, Hong Yue, Kewei Feng, Xianghong Du, Weining Song*, Xiaojun Nie*. Characterization of microRNAs and their targets in wild barley (Hordeum vulgare subsp. spontaneum) using deep sequencing. Genome, 2016, 5 , 59.
[29] Mengxing Wang, Licao Cui, Kewei Feng, Pingchuan Deng, Xianghong Du, Fanghao Wan, Weining Song*, Xiaojun Nie*. Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution. Plant Molecular Biology Reporter, 2015, 5, 33.
[30] Pingchuan Deng, Le Wang, Licao Cui, Keiwei Feng, Fuyan Liu, Xianghong Du, Wei Tong, Xiaojun Nie, Wanquan Ji, Weining Song*. Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress. PLoS One. 2015, 10(9): e0137990.
[31] Pingchuan Deng#, Xiaojun Nie#, Le Wang, Licao Cui, Peixun Liu, Wei Tong, Siddanagouda S. Biradar, David Edwards, Paul Berkman, Hana ?imková, Jaroslav Dole?el, Mincheng Luo, Frank You, Jacqueline Batley, Delphine Fleury, Rudi Appels, Song Weining. Computational identification and comparative analysis of wheat miRNAs in group 7 chromosomes. Plant molecular biology Reporter, 2014, 32, 487-500. (SCI收录, 影响因子2.304)
[32] Yunze Lu, Le Wang, Hong Yue, Mengxing Wang, Pingchuan Deng, David Edwards, Weining Song*. Comparative analysis of Stowaway–like MITEs in wheat group 7 chromosomes: abundance, composition and evolution. Journal of Systematics and Evolution, 2014, 52(6): 743–749.
[33] Xiaojun Nie, Peixun Liu, Pingchuan Deng, Yunze Lu, Siddanagouda S. Biradar, Xiangong Du, Aiping Wu, Fanghao Wan, Weining Song*. Large scale identification of microsatellites for a major invasive weed, Ageratina adenophora using the Illumina sequencing technology. Weed research, 2014, 54, 134-139.
[34] Xiaojun Nie, Pingchuan Deng, Kewei Feng, Peixun Liu, Xianghong Du, Frank M You, Weining Song*. Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family. Plant Molecular Biology Reporter, 2014, 32, 828-840.
[35] Luo, M……. Weining Song et al. (2013) A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proceedings of the National Academy of the Sciences of the United States of America 110:7940-7945
[36] Berkman, P, Visendi P, Lee H, Stiller J, Manoli S, Lorenc M, Lai K, Batley J, Fleury D, SimkováH, KubalákováM, Weining Song, Doležel J, Edwards D (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnol Journal 11:564-571.
[37] Xiaojun Nie, Shuzuo Lv, Yingxin Zhang, Xiangong Du, Le Wang, Siddanagouda S. Biradar, Xiufang Tan, Fanghao Wan, Weining Song*. Complete chloroplast genome of a major invasive species, Crofton weed (Ageratina adenophora L.). PLoS ONE, 2012, 5, e36869.
[38] Xiaojun Nie, Bianli Li, Le Wang, Peixun Liu, Siddanagouda S. Biradar, Tao Li, Jaroslav Dolezel, David Edwards, Mingcheng Luo, Weining Song*. Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology. American Journal of Botany, 2012, 99, e369–e371.
[39] Shuzuo Lv, Xiaojun Nie, Le Wang, Siddanagouda S. Biradar, Xiaoou Jia, Weining Song*. Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by Solexa sequencing. International Journal of Molecular Science, 2012, 13, 2973–2984.
[40] Yuerong Zhang, Xiaojun Nie, Xiaoou Jia, Cunzhen Zhao, Siddanagouda S. Biradar B, Le Wang, Xianghong Du, Weining Song*. Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family. Australia Journal of Botany, 2012, 60, 461–470.
[41] Chen, Y. H., Weining, S. and Daggard, G. (2003) Preparation of total RNA from a very small wheat embryo suitable for differential display. Annals of Applied Biology 143: 261-264 (通讯作者)
[42] Chen, Y. H., Weining, S. and Daggard, G. (2004) Anchor primer associated problems in differential display reverse transcription polymerase chain reaction. Analytical Biochemistry 329, 145-147 (通讯作者)
[43] Chen, G., Sagi, M., Weining, S., Krugman, T., Fahima, T., Korol, A. B. and Nevo, E. (2004) Wild barley eibi1 mutation identifies a gene essential for leaf water conservation. Planta 219, 684-693
[44] Jin Y., Weining, S., and Nevo, E. (2005) A MAPK gene from a Dead Sea fungus confers stress tolerance to lithium salt and freezing-thawing: Prospects for saline agriculture. Proceedings of the National Academy of Sciences 102, 18992-18997
[45] Hu, Y., Zhu, J., Liu, F., Zhang, Z., Chai Y., Song, W., (2008) Genetic Diversity among Chinese Landraces and Cultivars of Broomcorn Millet (Panicum miliaceum L.) Annals of Applied Biology 153,357—364 (通讯作者)
[46] Lei, C., Su, R., Bower, M., Edwards, C., Wang, C., Song, W.,S., Liu, L., Xie, M., Li, F., Liu, R., Zhang, Y., Zhang, C. and Chen, H. (2009) Multiple maternal origins of native modern and ancient horse populations in China. Animal Genetics, 40, 933—944
发表中文期刊论文:
[1]葛玲巧,Farhana Kumbhar,赵贤,王萌,王莎,宋卫宁,聂小军.乌拉尔图小麦叶绿体RNA编辑位点的预测与鉴定[J].分子植物育种,2017,15(07):2479-2488.
[2]邢光伟,王梦醒,马小飞,赵贤,张婷,聂小军,宋卫宁.小麦LBD基因家族的全基因组鉴定、表达特性及调控网络分析[J].麦类作物学报,2017,37(07):855-863.
[3]刘慧,王梦醒,岳文杰,邢光伟,葛玲巧,聂小军,宋卫宁.糜子叶绿体基因组密码子使用偏性的分析[J].植物科学学报,2017,35(03):362-371.
[4]聂小军,冯克伟,宋卫宁.双语教学在研究型农业大学中的重要性及其对策研究[J].大学教育,2017(01):103-104.
[5]吕萌荔,聂小军,宋卫宁.浅析大学生创新项目对创新思维培养的作用[J].中国林业教育,2016,34(03):7-9.
[6]刘思妍,冯克伟,卞建新,王萌,杨智凯,聂小军,宋卫宁.野生二粒小麦叶绿体基因RNA编辑位点的预测、鉴定与分析[J].麦类作物学报,2015,35(12):1609-1616.
[7]吕萌荔,王梦醒,贾晓鸥,邓平川,聂小军,宋卫宁.紫茎泽兰叶绿体基因RNA编辑位点的鉴定及分析[J].西北农业学报,2015,24(02):127-133.
[8]王梦醒,詹豪爽,吕萌荔,刘思妍,宋卫宁.粗山羊草叶绿体基因RNA编辑位点的鉴定与分析[J].麦类作物学报,2014,34(10):1341-1349.
[9]刘萌娟,李鸣雷,郭小华,王静雅,宋卫宁.陕西豌豆种质资源形态性状遗传多样性分析[J].西北农林科技大学学报(自然科学版),2014,42(10):70-80.
[10]牛善策,石文清,刘培勋,邓平川,张月荣,李变丽,吕树作,聂小军,王乐,宋卫宁.中东大麦群体农艺性状多样性与生态地理因素的关联分析[J].西北农业学报,2012,21(04):42-46+59.
[11]石文清,邓平川,李变丽,牛善策,聂小军,王乐,Abdul·Wahid·Baloch,宋卫宁.二穗短柄草叶绿体RNA编辑位点的预测及其鉴定[J].麦类作物学报,2012,32(01):28-35.
[12]张迎新,贾晓鸥,张月荣,杜向红,万方浩,宋卫宁.紫茎泽兰高分子量核DNA制备方法的研究[J].西北植物学报,2011,31(12):2551-2557.
[13]程睿,Kansaye Aly,杜向红,吕树作,宋卫宁.不同麦类种质资源苗期冠腐病抗性鉴定与分析[J].西北农业学报,2011,20(09):31-34+88.
[14]谭秀芳,杜向红,牛善策,聂小军,张迎新,万方浩,宋卫宁.基于叶绿体序列分析紫茎泽兰在菊科的系统发育[J].西北农业学报,2011,20(04):138-143.
[15]解松峰,欧行奇,张百忍,聂小军,杜向红,张宝军,宋卫宁.大麦引进种质资源表型的多样性与模糊聚类分析[J].干旱地区农业研究,2010,28(05):5-14.
[16]李康,聂小军,方桂英,王乐,岳华,佘奎军,宋卫宁.普通小麦及其近缘种NCED基因的克隆及表达分析[J].西北农业学报,2010,19(06):55-59.
[17]方桂英,杜向红,张保军,程睿,李康,岳华,王长发,吕树作,宋卫宁.约旦野生大麦种质资源形态与产量性状分析[J].西北农业学报,2010,19(06):78-83.
[18]高永钢,杜向红,金广慧,程睿,佘奎军,聂小军,解松峰,吉万全,宋卫宁.不同生境下以色列野生大麦群体与栽培大麦农艺性状的遗传多样性分析[J].西北农业学报,2010,19(05):57-64.
[19]岳华,杜向红,吕树作,方桂英,李康,王乐,聂小军,宋卫宁.转酿酒酵母HOG1基因拟南芥植株的获得与检测[J].西北农业学报,2010,19(04):86-90.
[20]解松峰,Kansaye Aly,杜向红,聂小军,方桂英,杨建涛,李康,张保军,宋卫宁.30份引进大麦品种(系)苗期耐盐性综合分析[J].草业科学,2010,27(04):127-133.
[21]杨建涛,李康,杜向红,宋卫宁.以色列二穗短柄草遗传多样性分析[J].西北植物学报,2010,30(04):683-689.
[22]金广慧,杜向红,谭秀芳,高永钢,宋卫宁.硬粒小麦和野生二粒小麦高分子量谷蛋白亚基的遗传多样性[J].麦类作物学报,2010,30(02):227-232.
[23]佘奎军,王士强,胡银岗,宋卫宁.野生大麦与栽培大麦醇溶蛋白遗传多样性比较[J].西北植物学报,2009,29(01):61-68.
发表会议论文:
[1]聂小军,宋卫宁,姜雨. 基于重测序的小麦遗传多样性与遗传变异研究[C]. 科技创新与扶贫攻坚——陕西省农作物学会第二届会员代表大会暨2019年学术年会摘要集. 2019:18-19.
[2]冯克伟,聂小军,宋卫宁,万方浩. 基于二代和三代测序技术研究紫茎泽兰转录组的复杂性[C]. 第五届全国入侵生物学大会——入侵生物与生态安全会议摘要. 2018:51.
[3]曹文进,邢莉萍,熊琴,李英俊,陈金慧,孙亚民,黄麟,梁建国,张芳,聂小军,曾庆东,曹爱忠,张宏,宋卫宁,王中华,韩德俊,吉万全,康振生,施季森,徐海滨. 基于BAC文库的普通小麦中国春2DS基因组组装[C]. 江苏省遗传学会2017年学术研讨会——“技术创新与遗传学发展”论文摘要集. 2017:15.
[4]崔立操,冯克伟,聂小军,宋卫宁. 大麦MAPK cascade基因家族的全基因组鉴定、进化与共表达网络分析[C]. 第八届全国小麦基因组学及分子育种大会摘要集. 2017:115.
[5]冯克伟,崔立操,聂小军,宋卫宁. 大麦基因表达水平与基因家族扩张间的效应分析[C]. 第八届全国小麦基因组学及分子育种大会摘要集. 2017:251.
[6]聂小军,崔立操,冯克伟,宋卫宁. 65个大麦叶绿体基因组的测序及系统分化分析[C]. 第八届全国小麦基因组学及分子育种大会摘要集. 2017:252.
[7]王乐,聂小军,童维,Simkova Hana,Safar Jan,Dolezel Jaroslav,Rudi Apples,Mingcheng Luo,宋卫宁. 小麦7DL染色体参考序列/人工分子(pseudomolecule)组装[C]. 第六届全国小麦基因组学及分子育种大会论文集. 2015:29-30.
[8]马猛,李赵杰,宋卫宁,赵惠贤. 小麦穗部病毒诱导基因沉默体系的建立及籽粒大小相关基因TaCYP78A3的功能研究[C]. 第六届全国小麦基因组学及分子育种大会论文集. 2015:35-36.
[9]童维,邓平川,崔立操,冯克伟,聂小军,宋卫宁. 整合转录组、蛋白质组和microRNA数据解析小麦穗发育过程[C]. 第六届全国小麦基因组学及分子育种大会论文集. 冯克伟,邓平川,吕萌荔,王萌,卞建新,宋卫宁,聂小军. 野生二粒小麦盐胁迫相关miRNA的鉴定与表达特性分析[C]. 第六届全国小麦基因组学及分子育种大会论文集.中国作物学会:中国作物学会,2015:112.
[11]刘思妍,冯克伟,卞建新,王萌,杨智凯,聂小军,宋卫宁. 野生二粒小麦叶绿体基因RNA编辑位点的预测与鉴定分析[C]. 第六届全国小麦基因组学及分子育种大会论文集. 2015:113.
[12]马猛,李赵杰,宋卫宁,赵惠贤. 小麦籽粒大小相关基因TaCYP78A5的功能研究[C]. 第六届全国小麦基因组学及分子育种大会论文集. 2015:125.
[13]万方浩,谢丙炎,刘万学,程红梅,成新跃,褚栋,张大勇,姜丽芬,李博,杨继,廖万金,谭建文,桂富荣,张德咏,余昊,宋卫宁. 课题1“重要入侵物种种群形成与生态适应性”主要研究进展[C]. 第三届全国生物入侵大会论文摘要集——“全球变化与生物入侵”. 2010:25-26.